Solutions Modeling Dynamics of Life 3ed Adler - Chapter 8.1

8.1.1 Suppose we wish to calculate the proportion of days that the temperature rises above 20?C. Evaluate the following sampling schemes. Sample 100 consecutive days beginning on January 1.
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8.1.2 Suppose we wish to calculate the proportion of days that the temperature rises above 20?C. Evaluate the following sampling schemes. Sample 100 consecutive days beginning on June 1.
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8.1.3 Suppose we wish to calculate the proportion of days that the temperature rises above 20?C. Evaluate the following sampling schemes. Sample the temperature on March 15 for 100 years.
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8.1.4 Suppose we wish to calculate the proportion of days that the temperature rises above 20?C. Evaluate the following sampling schemes. What might be a good method if only 100 days could be sampled?
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8.1.5 A clever pollster decides to find the average income of people by calling random individuals on the phone. It turns out, however, that people with cellular phones make $40,000 and people with regular phones make $20,000. Furthermore, 20% of people have cellular phones. What is the true average income in this population?
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8.1.6 A clever pollster decides to find the average income of people by calling random individuals on the phone. It turns out, however, that people with cellular phones make $40,000 and people with regular phones make $20,000. Furthermore, 20% of people have cellular phones. What income would be estimated if people with cell phones were easier to reach, and 50% of the people called had cell phones?
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8.1.7 Consider again the situation in Exercises 5 and 6, but suppose that incomes for people with cell phones are normally distributed according to N (40000, 4.0 ×...) (measured in 1999 U.S. dollars). The distribution for people without cellular phones is N(20000, 1.0 ×...). What distribution describes the result of sampling 20 people with cellular phones? Use the rule of thumb that 95% of the distribution lies within two standard deviations of the mean to give a probable range. Compare this with the true average of the population.
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8.1.8 Consider again the situation in Exercises 5 and 6, but suppose that incomes for people with cell phones are normally distributed according to N (40000, 4.0 ×...) (measured in 1999 U.S. dollars). The distribution for people without cellular phones is N(20000, 1.0 ×...). What would be the results of sampling 20 people without cellular phones? Use the rule of thumb that 95% of the distribution lies within two standard deviations of the mean to give a probable range. Compare this with the true average of the population.
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8.1.9 Find the likelihood as a function of the binomial proportion p for each of the following. Flipping 2 out of 4 heads with a fair coin. Evaluate at p = 0.5, the value for a fair coin.
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8.1.10 Find the likelihood as a function of the binomial proportion p for each of the following. Rolling 2 out of 4 sixes with a fair die. Evaluate at p = 1/6, the value for a fair die.
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8.1.11 Find the likelihood as a function of the binomial proportion p for each of the following. Flipping 2 out of 12 heads with a fair coin.
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8.1.12 Find the likelihood as a function of the binomial proportion p for each of the following. Rolling 2 out of 12 sixes with a fair die.
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8.1.13 Find the probability distribution associated with the following random variables, and identify which part corresponds to the likelihood found in the earlier problem. Let H represent the number of heads in four flips of a fair coin. Compare with Exercise 9.
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8.1.14 Find the probability distribution associated with the following random variables, and identify which part corresponds to the likelihood found in the earlier problem. The number N of sixes rolled in four rolls of a fair die. Compare with Exercise 10.
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8.1.15 Find the likelihood as a function of the binomial proportion p in each of the following cases, and find the maximum likelihood. Team A wins five out of six games in a series against team B. Find the maximum likelihood estimator of the probability that team A wins a game against team B. If you were willing to gamble, would it make sense to enter a bet about the next game in the series where you win $1 if team A wins, but lose $6 if team A loses?
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8.1.16 Find the likelihood as a function of the binomial proportion p in each of the following cases, and find the maximum likelihood. One out of 150 people you know wins $500 in a raffle that costs $5 to enter. Find the maximum likelihood estimator of the probability of winning the raffle. What is your best guess of the average payoff?
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8.1.17 Find the likelihood as a function of the Poisson parameter Λ, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of Λ. Twenty events occur in 1 min. Compare the likelihood with the maximum likelihood estimator of Λ with the likelihood if Λ= 10.0.
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8.1.18 Find the likelihood as a function of the Poisson parameter Λ, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of Λ. Ten high energy cosmic rays hit detector over the course of 1 yr. Compare the likelihood with the maximum likelihood estimator of Λ with the likelihood if Λ = 8.0.
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8.1.19 Find the likelihood as a function of the Poisson parameter Λ, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of Λ. The number of events that occur are counted for 3 min. Twenty events occur the first minute, 16 events occur the second minute, and 21 events occur the third minute. Compare the likelihood with the maximum likelihood estimator of Λ with the likelihood if Λ= 20.0.
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8.1.20 Find the likelihood as a function of the Poisson parameter Λ, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of Λ. Ten high energy cosmic rays hit detector in its first year, 7 in the second year, 11 in the third year, and 8 in the fourth and final year. Compare the likelihood with the maximum likelihood estimator of Λ with the likelihood if Λ = 10.0.
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8.1.21 Find the likelihood as a function of the parameter q of a geometric distribution, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of q. Flies are tested for the ability to learn to fly toward the smell of potato, and the first to succeed is the 13th. Compare with the likelihood of q = 0.1.
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8.1.22 Find the likelihood as a function of the parameter q of a geometric distribution, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of q. Random compounds are tested for the ability to suppress a particular type of tumor, and the first to succeed is the 94th. Compare with the likelihood of q = 0.005.
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8.1.23 Find the likelihood as a function of the parameter q of a geometric distribution, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of q. The experiment testing flies for the ability to learn to fly toward the smell of potato is repeated three times. In the first experiment the first fly to succeed is the 13th, in the second experiment it is the 8th, and in the third experiment it is the 12th. Compare with the likelihood of q = 0.1.
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8.1.24 Find the likelihood as a function of the parameter q of a geometric distribution, find the maximum likelihood estimator, and evaluate the likelihood at the maximum and at the other given value of q. The experiment testing compounds for the ability to suppress tumors is repeated twice. In the first experiment the first compound to succeed is the 94th, and in the second experiment it is the 406th. Compare with the likelihood of q = 0.005.
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8.1.25 Write down the equations that would express the fact that the following estimators are unbiased. The estimator of q in Exercise 21.
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8.1.26 Write down the equations that would express the fact that the following estimators are unbiased. The estimator of Λ in Exercise 17. If you think about the definition of the expectation, you might be able to demonstrate that this estimator is unbiased.
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8.1.27 In each of the following cases where a very small number of individuals is tested for an allele, find and graph the likelihood function for the proportion p of individuals in the whole population with this allele, find the maximum likelihood estimator, and make sense of the likelihood at p = 0 and p = 1. Tw o individuals are tested for a particular allele and one has it.
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8.1.28 In each of the following cases where a very small number of individuals is tested for an allele, find and graph the likelihood function for the proportion p of individuals in the whole population with this allele, find the maximum likelihood estimator, and make sense of the likelihood at p = 0 and p = 1. Three individuals are tested for a particular allele, and all three have it.
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8.1.29 Thirty out of 100 individuals are found to be infected with a disease. Estimate the proportion of infected women and infected men in the following circumstances. Assuming that the whole population is composed of 50% women, estimate the infected proportion in the whole population. The sample consists of 20 out of 50 infected women and 10 out of 50 infected men.
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8.1.30 Thirty out of 100 individuals are found to be infected with a disease. Estimate the proportion of infected women and infected men in the following circumstances. Assuming that the whole population is composed of 50% women, estimate the infected proportion in the whole population. The sample consists of 20 out of 40 infected women and 10 out of 60 infected men.
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8.1.31 Thirty out of 100 individuals are found to be infected with a disease. Estimate the proportion of infected women and infected men in the following circumstances. Assuming that the whole population is composed of 50% women, estimate the infected proportion in the whole population. The sample consists of 20 out of 20 infected women and 10 out of 80 infected men.
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8.1.32 Thirty out of 100 individuals are found to be infected with a disease. Estimate the proportion of infected women and infected men in the following circumstances. Assuming that the whole population is composed of 50% women, estimate the infected proportion in the whole population. The sample consists of 0 out of 50 infected women and 30 out of 50 infected men.
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8.1.33 Two couples are trying to have more girl babies. For each, find the likelihood function for the fraction q of female sperm and the maximum likelihood estimator, and compare with the likelihood of q = 0.5. The first couple has seven boys before having a girl. Use the geometric distribution to build the likelihood as a function of q.
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8.1.34 Two couples are trying to have more girl babies. For each, find the likelihood function for the fraction q of female sperm and the maximum likelihood estimator, and compare with the likelihood of q = 0.5. Another couple has four boys, then one girl, then three more boys. Find the likelihood as a function of q.
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8.1.35 Use the method of maximum likelihood to estimate the rate λ from the accompanying table of data drawn from an exponential distribution. ... In each case, find the likelihood function, find the maximum likelihood, and say whether it seems probable that the true rate is 1.0. For waiting time 1.
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8.1.36 Use the method of maximum likelihood to estimate the rate λ from the accompanying table of data drawn from an exponential distribution. ... In each case, find the likelihood function, find the maximum likelihood, and say whether it seems probable that the true rate is 1.0. For waiting time 2.
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8.1.37 Mutations are counted in four pieces of DNA that are 1 million base pairs long. There are 14 mutations in the first piece, 17 in the second piece, 8 in the third piece, and 5 in the fourth piece. Write the likelihood function for the expected number of mutations per million bases in the first piece and find the maximum likelihood estimator.
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8.1.38 Mutations are counted in four pieces of DNA that are 1 million base pairs long. There are 14 mutations in the first piece, 17 in the second piece, 8 in the third piece, and 5 in the fourth piece. Write the likelihood function for the expected number of mutations per million bases in the second piece and find the maximum likelihood estimator.
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8.1.39 Mutations are counted in four pieces of DNA that are 1 million base pairs long. There are 14 mutations in the first piece, 17 in the second piece, 8 in the third piece, and 5 in the fourth piece. Write the likelihood function for the expected number of mutations per million bases in the first two pieces and find the maximum likelihood estimator. Compare this with the estimated expected number for each of the two pieces separately.
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8.1.40 Mutations are counted in four pieces of DNA that are 1 million base pairs long. There are 14 mutations in the first piece, 17 in the second piece, 8 in the third piece, and 5 in the fourth piece. Write the likelihood function for the expected number of mutations per million bases in the first four pieces and find the maximum likelihood estimator. Compare this with the estimated expected number for each of the four pieces separately.
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8.1.41 Mutation rates differ depending on whether changing the nucleotide base changes the amino acid (nonsynonymous sites) or not (synonymous sites). A piece of DNA has 200 nonsynonymous sites with 12 mutations and 100 synonymous sites with 15 mutations. Our goal is to estimate the mutation rate. Estimate ... , the mutation rate for synonymous sites, from the given data.
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8.1.42 Mutation rates differ depending on whether changing the nucleotide base changes the amino acid (nonsynonymous sites) or not (synonymous sites). A piece of DNA has 200 nonsynonymous sites with 12 mutations and 100 synonymous sites with 15 mutations. Our goal is to estimate the mutation rate. Estimate ...the mutation rate for nonsynonymous sites, from the given data.
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8.1.43 Mutation rates differ depending on whether changing the nucleotide base changes the amino acid (nonsynonymous sites) or not (synonymous sites). A piece of DNA has 200 nonsynonymous sites with 12 mutations and 100 synonymous sites with 15 mutations. Our goal is to estimate the mutation rate. Suppose we assume that the synonymous and nonsynonymous rates are both equal to the same value λ. Estimate λ, and compare with the values of ...found in Exercises 41 and 42.
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8.1.44 Mutation rates differ depending on whether changing the nucleotide base changes the amino acid (nonsynonymous sites) or not (synonymous sites). A piece of DNA has 200 nonsynonymous sites with 12 mutations and 100 synonymous sites with 15 mutations. Our goal is to estimate the mutation rate. Suppose instead that the synonymous rate is three times that of the nonsynonymous rate. Formally, ...Estimate λ, and compare with the values of λ found in Exercises 41 and 42.
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8.1.45 Color blindness is due to a recessive allele that appears on the X chromosome. If the color blindness allele has frequency p, a fraction p of males will show the phenotype, and a fraction ... of females will show the phenotype (because they require two copies). We wish to estimate the fraction p from a sample of 1000 males, 90 of whom are color-blind, and 1000 females, 13 of whom are color-blind. Estimate p using just the males.
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8.1.46 Color blindness is due to a recessive allele that appears on the X chromosome. If the color blindness allele has frequency p, a fraction p of males will show the phenotype, and a fraction ... of females will show the phenotype (because they require two copies). We wish to estimate the fraction p from a sample of 1000 males, 90 of whom are color-blind, and 1000 females, 13 of whom are color-blind. Estimate p using just the females.
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8.1.47 Color blindness is due to a recessive allele that appears on the X chromosome. If the color blindness allele has frequency p, a fraction p of males will show the phenotype, and a fraction ... of females will show the phenotype (because they require two copies). We wish to estimate the fraction p from a sample of 1000 males, 90 of whom are color-blind, and 1000 females, 13 of whom are color-blind. Write the likelihood function for males and females together.
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8.1.48 Color blindness is due to a recessive allele that appears on the X chromosome. If the color blindness allele has frequency p, a fraction p of males will show the phenotype, and a fraction ... of females will show the phenotype (because they require two copies). We wish to estimate the fraction p from a sample of 1000 males, 90 of whom are color-blind, and 1000 females, 13 of whom are color-blind. Evaluate the likelihood function in Exercise 47 at p = 0.09, p = 0.114, and p = 0.1. Where do you think the maximum might be? If you are very determined, it is possible to solve for the maximum.
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8.1.49 Simulate the following experiments. a. People have a 0.4 chance of having black hair. Simulate 50 groups of five people. How many groups have exactly two out of five people with black hair?
b. Suppose instead that two out of five people are found with black hair. Simulate 50 groups of five people with different unknown probabilities p that a person has black hair. Use values of p ranging from 0 to 1.0. Which value produces the most groups that exactly match the data? c. Find and plot the likelihood function describing this case. Where is the maximum? What does it correspond to in your simulation?
d. Explain how the two simulations differ. In each case, indicate what is known and what is unknown.
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8.1.50 Cells are placed for 1 min in an environment where they are hit by X-rays, some of which are damaging. Cells not hit by the damaging rays are healthy, those hit exactly once are damaged, and those hit more than once are dead. By measuring the states of a number of cells, we wish to infer the rate at which cells are hit by damaging rays. Let x denote the unknown parameter of the Poisson distribution. Use the formula for the Poisson distribution to compute the probabilities ...of more than one hit in 1 min as functions of x.
a. Suppose the true value of x is 3.0. Plot the histogram. b. Simulate 50 cells, and count how many you have of each type. (To keep things interesting, keep sampling until you get at least one cell of each type.)
c. Compare the results of your simulation with the idealized histogram.
d. Now pretend that x is unknown. We can use the method of maximum likelihood to analyze our data. Find the likelihood function L of these data (it is the product of the likelihoods for each of the 50 cells) as a function of the unknown parameter y, and let S be the natural log of L. Plot S(y) over a reasonable range.
e. Find the maximum of S and mark it on your graph.
f. Find the S(x) for x = ..., x = 2, x = 4, and the “truth” x = 3, and indicate each on your graph.
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